As can be seen on the issue linked above, this is in no way specific to GrapheneOS as F-Droid members initially try to claim there, and this happens with the POST_NOTIFICATIONS permission too, which comes from Android.
They initially broke automatic updates due to this, and now show this confusing toast notification.
I have personally explained this along with the POST_NOTIFICATIONS example to their team, which hopefully was the reason they stopped breaking automatic updates, but they should fix this toast notification, too.
Perhaps they will now that they've been convinced once again that it has nothing to do with GrapheneOS.